Archive for the ‘Nature’ Category

Reading List

Tuesday, September 2nd, 2008

Prior to 2005 I was reading mostly the kind of books that make the Whitcoulls Top 100 list along with the occasional classic by the likes of Dostoevsky, Hardy and others. And, of course, Iain [M] Banks whenever a new book came out.

In early 2005 a friend recommended Bill Bryson’s A Short History of Nearly Everything. It was this simple book that, to my great surprise, allowed me to clearly see the fact that my view of reality didn’t match what we can observe of the universe around us. Subconsciously I’d been aware of this fact but had managed to ignore it for 14 years or so. I decided that I would be better off with truth rather than a comforting fantasy and decided to investigate further. I watched a lot of documentaries, visited a lot of websites (and blogs) and talked with a lot of interesting people. I also read a lot of books - here are the ones that have influenced me the most over the last three years:

The Bible - Various Authors
The Mind of God - Paul Davies
A Brief History of Time - Stephen Hawking
E=mc2 - David Bodanis
Deep Simplicity - John Gribbin
Pale Blue Dot - Carl Sagan
The Selfish Gene - Richard Dawkins
Climbing Mount Improbable - Richard Dawkins
The Origin of Species - Charles Darwin
The Demon-Haunted World - Carl Sagan
The God Delusion - Richard Dawkins
Letter to a Christian Nation - Sam Harris
The Richness of Life - Stephen J Gould
The Creation - E O Wilson
The End of Faith - Sam Harris
Various Writings - Thomas Paine
Breaking the Spell - Daniel Dennett
Why People Believe Weird Things - Michael Shermer
God is not Great - Christopher Hitchens
Infidel - Ayaan Hirsi Ali
Freakonomics - Levitt & Dubner
The Blank Slate - Steven Pinker
Consciousness, An Introduction - Susan Blackmore

And I have the following books waiting to be read:

Guns, Germs and Steel - Jared Diamond
How The Mind Works - Steven Pinker
The Ancestor’s Tale - Richard Dawkins
Freedom Evolves - Daniel Dennett

I’m not sure where I’ll go to from here but I feel I’ve done the topics of religion, superstition and pseudoscience to death. Evolution, cosmology and the workings of the mind still fascinate me so I’ll probably carry on down that path for a while.

Thought Experiment #3

Thursday, July 31st, 2008

If a super-super-duper machine was able to scan the exact physical state of your entire brain and were to recreate your brain exactly as it is in another body would there then be two of “you”? Where would “you” be?

  • In the original
  • In both but branching from there
  • It’s impossible and always will be
  • The other would be a soulless zombie
  • Something else?

Thought Experiment #2

Thursday, July 31st, 2008

Imagine a super-duper clever machine that can work its way through your brain and, one cell at a time, remove a cell and create a new cell in its place that is physically identical in every way. I know that the brain has a lot of cells but let’s say one cell is replaced every hour and time isn’t an issue (this is, after all, a thought experiment).

When the machine was finished, what would you experience? That you are still there or that you have gradually died?

Or would there be a crucial part of the brain in which you cannot swap even a single cell without destroying what is “you”? If so, where might this be? And would this be remedied by replacing atom-by-atom?

Thought Experiment #1

Thursday, July 31st, 2008

If you were to undergo surgery that swapped your brain with someone else’s, what would you experience after the operation?

  • You are in a new body?
  • You are in your old body?
  • “You” would be gone and a new “you” with all your memories would carry on?
  • There is no such thing as “you”? (the question is invalid)
  • Something else?

The Ascent Of Man

Tuesday, July 29th, 2008

The Ascent Of Man

In 1973 the BBC released a TV documentary series in 13 episodes by mathematician Jacob Bronowski called The Ascent Of Man. 35 years later I purchased it as a DVD box set on the recommendation of a fellow science documentary aficionado.

It’s extremely good! And I’m not just saying that in the context of the era in which it was produced. Sure, some of the music grates on the nerves and some of the graphics don’t compare to what we are capable of these days but overall it’s got a depth that is often missing from the kind of documentaries found on the Discovery Channel. Actually, I take back my comment about the music; it features music from Meddle - my second-favourite Pink Floyd album - which, for me, redeems a multitude of musical sins.

Bronowski is thoughtful, poetic and very deliberate in every sentence. He gives you the feeling that he is treating you, the viewer, as an equal throughout and he conveys a sense of awe that is impossible to resist.

Most moving for me was a scene where Bronowski is visiting a Nazi concentration camp where many of his relatives were murdered. According to the interview with Attenborough in the bonus material the entire scene was spontaneous and filmed in a single take:

Bronowski died a year later of a heart attack at the age of 66.

Steven Pinker - A brief history of violence

Friday, July 18th, 2008

I’ve heard that Pinker is considering putting pen to paper to more fully address the issue of the history of violence. If it’s as thorough as his excellent The Blank Slate then I look forward to seeing a detailed presentation of the facts to support the claims he puts forward in this video.

In Remembrance of Galileo

Friday, July 18th, 2008

In celebration of the World Youth Day in Sydney and of the recent “Academic Freedomlaw changes in Louisiana I’d like to present Galileo Galilei’s confession for the “absurd and philosophically false” notion that “the earth is not the center of the world, nor immovable, but that it moves”:

I, Galileo Galilei, son of the late Vincenzio Galilei of Florence, aged 70 years, tried personally by this court, and kneeling before You, the most Eminent and Reverend Lord Cardinals, Inquisitors-General throughout the Christian Republic against heretical depravity, having before my eyes the Most Holy Gospels, and laying on them my own hands; I swear that I have always believed, I believe now, and with God’s help I will in future believe all which the Holy Catholic and Apostolic Church doth hold, preach, and teach.

But since I, after having been admonished by this Holy Office entirely to abandon the false opinion that the Sun was the centre of the universe and immoveable, and that the Earth was not the centre of the same and that it moved, and that I was neither to hold, defend, nor teach in any manner whatever, either orally or in writing, the said false doctrine; and after having received a notification that the said doctrine is contrary to Holy Writ, I did write and cause to be printed a book in which I treat of the said already condemned doctrine, and bring forward arguments of much efficacy in its favour, without arriving at any solution: I have been judged vehemently suspected of heresy, that is, of having held and believed that the Sun is the centre of the universe and immoveable, and that the Earth is not the centre of the same, and that it does move.

Nevertheless, wishing to remove from the minds of your Eminences and all faithful Christians this vehement suspicion reasonably conceived against me, I abjure with sincere heart and unfeigned faith, I curse and detest the said errors and heresies, and generally all and every error and sect contrary to the Holy Catholic Church. And I swear that for the future I will neither say nor assert in speaking or writing such things as may bring upon me similar suspicion; and if I know any heretic, or one suspected of heresy, I will denounce him to this Holy Office, or to the Inquisitor and Ordinary of the place in which I may be.

I also swear and promise to adopt and observe entirely all the penances which have been or may be by this Holy Office imposed on me. And if I contravene any of these said promises, protests, or oaths, (which God forbid!) I submit myself to all the pains and penalties which by the Sacred Canons and other Decrees general and particular are against such offenders imposed and promulgated. So help me God and the Holy Gospels, which I touch with my own hands.

I Galileo Galilei aforesaid have abjured, sworn, and promised, and hold myself bound as above; and in token of the truth, with my own hand have subscribed the present schedule of my abjuration, and have recited it word by word. In Rome, at the Convent della Minerva, this 22nd day of June, 1633.

I, GALILEO GALILEI, have abjured as above, with my own hand.

Allan Wilson - Evolutionary

Monday, July 7th, 2008

On Saturday I trundled along to Academy Cinemas in Auckland to watch a documentary on the life and achievements of Allan Wilson, a NZ-born molecular evolutionary biologist.

Allan Wilson was born in Ngaruawahia in 1934 and died of leukaemia in 1991. He spent most of his life in the United States where he formed the Allan Wilson Centre for Molecular Ecology and Evolution at Berkeley.

So what was so special about Allan Wilson that a documentary was made about him?

At the time that Wilson was studying, the theory of evolution didn’t really have much objective data to go on regarding the differences between species. People could look at the size and shape of a bone and compare it with other species (across the outside of the tree of life) and they could see back down inside the branches by digging up old bones to see if modern species might share common ancestors. Going by morphology (i.e. how things look) is a fairly inexact science and while it might point you in the right direction it would have been nicer to be able to use numbers to be able to make mathematical and statistical predictions.

We take DNA for granted these days but in Wilson’s time very little was known about these building blocks of life.

Wilson straddled a path between zoology and molecular chemistry which were both tackling the problem of evolution from quite different angles. He caught a bit of flak for his attempts to marry the two but he drew the most fire from creationists - surprise, surprise - when some of his later experiments began to show the true, measurable relationships between humans and other species, namely the great apes.

He was heavily involved in the concept of the molecular clock, which is a way of finding how closely related one species is to another at the genetic level without necessarily being able to read the genes themselves. You may have also heard of the Mitochondrial Eve hypothesis - that’s his too.

Since his death both the human and the chimpanzee genomes have been read and have further bolstered the conclusions he was able to make by merging two seemingly disparate sciences. And also, sadly, since his death advances in diagnosis as well as treatment of leukaemia have been made due to the methods he and his team pioneered.

The film-maker went so far as to say that in the years to come Allan Wilson’s name will become synonymous with some of the other pioneers in the theory of evolution by natural selection. And everyone seems to agree; just about everything that present-day evolutionary biologists are working on stems from the advancements of this one bloke from Ngaruawahia.

Atheism, evolution and morals

Tuesday, July 1st, 2008

Today I was asked by Rhett, a Christian pastor-to-be,

Where would you say your concern for human suffering comes from in that you are an Atheist evolutionists. Forgive me for simplifying things terribly here, but do you see the moral compass as having evolved? And isn’t evolution all about survival of the fittest, might is right etc? How does concern for others suffering coming into you worldview?”

Evolution is a scientific observation about how life works. How living organisms change through the generations and the mechanisms that cause those changes. Many people see evolution as anti-Christian because the evidence claimed by the theory of evolution by natural selection (the proper name for the theory) flies in the face of a literal interpretation of the creation story in the Bible. Evolution is only anti-Christian if you define Christianity in such a way that it relies on an explanation that contradicts the scientific findings - in the same way that the theory of gravity would be anti-Christian if one of the core tenets of Christianity was that the spirit of God is what keeps planets in their orbits.

Many Christians have no issue with evolution and any controversy about the fundamentals of the theory is within Christianity itself and stems from a multitude of interpretations of scripture.

Atheists are people who don’t believe that there is a God. I’m the kind of atheist who thinks that the question “Is there a God” is one that is as unprovable as the question “Is there an invisible pink unicorn” because most people’s definition of a God seems to entail the same, non-observable or non-testable properties. On the question of whether it’s possible to prove God exists or not I’m an agnostic but my conclusion after looking at the arguments and the evidence is that there is none.

This is not necessarily what an atheist wants however. I would personally like to carry on after I die and the thought of bad people getting their comeuppance in the end is pretty appealing.

The link between atheists and evolution only really exists because there really is no other plausible explanation for how life develops. Evolutionists are not necessarily atheists but atheists are unlikely to be anything but evolutionists because of the lack of rival explanations that don’t include a god.

The theory of evolution by natural selection makes the observation that the offspring that are best suited for the environment they find themselves in are going to be more likely to have more offspring themselves and this will cause more of the population of their species to have similar traits because children inherit many of their parent’s genes.

This is sometimes termed as “survival of the fittest” which some people take to mean that “only the bullies win”. But to be successful as a species it’s not necessarily the strongest and most aggressive that do well. Being small and agile is a popular survival mechanism. So is being good in the dark or being camouflaged or being able to fly or being able to eat lots of grass or plankton and so on and so on. Another trait that has proved extremely useful is the ability to cooperate with other members of your species and this leads me to the core of Rhett’s question; Morality.

Altruism is defined as looking after the interests of others over your own. Reciprocal altruism is looking after the interests of others with the expectation that they will repay the favour. Reciprocal altruism has always been easily explained in evolution; if a species develops a trait that will allow individuals to help each other out not only will those members of the species do better than their siblings but the species as a whole is likely to do well as a result. At a simple level genuine altruism is also easily explained because a species that develops the tendency to be willing to die to help the survival of your direct offspring or of members of your family group is going to be more likely to pass that tendency on. Your children who survive because of your altruism will more than likely carry the same genes and close relatives have a higher chance of carrying that same trait. For an excellent discussion of this topic read Dawkins’ The Selfish Gene.

So, self-sacrificing behaviour is very much a part of evolution and easily explained in even relatively simple creatures. Where it gets really complicated is with the likes of humans who not only inherit genes but have the hardware (brains and language) to spread memes (ideas).

We get much of our morality from our culture. Memes are spread around from person to person and from culture to culture. Some memes are bad, some good, others neutral - just like genes. Some people think our morality comes from God and struggle to understand how someone who doesn’t believe in a God (or, specifically, their God) can have morals. But morals are really just memes for how to best live in a society. Some morals are built into us at the level of our genes (a parent who will fight to the death for their child) and some are developed by trial and error or even by reason and passed from person to person as a meme (washing your hands after defecating - a reasonably recent meme). Often morals are encapsulated in the form of a religion and passed from person to person that way, perhaps because religion has been an excellent medium for spreading memes with its use of repetition, documentation, authority and so on.

Do you see the moral compass as having evolved?”
Yes, absolutely. Most of the core behaviours of morality can be explained by way of genes (especially if we can observe them in species that don’t spread memes - i.e. ‘learn’) and the rest in humans have been able to be propagated due to the fact that we have the hardware which allows us to be really good at spreading memes. And even memetic morality evolves, just not by the same mechanism as genes. In our current society it’s immoral to prohibit a woman from voting but our ancestors thought it perfectly reasonable.

“Isn’t evolution all about survival of the fittest, might is right etc?”
Nope. It’s all about how well suited you are to the environment you find yourself in. Also, please notice the difference between observing the process and mechanisms of evolution and believing in evolution (as if it were some kind of ideology).

How does concern for others suffering coming into you worldview?”
Like most people I inherited my morality from my family and from the culture I was brought up in. I’ve also read a lot of literature on different people’s opinions on how to best live as a society since then.

Morality is a game we all play and it’s a function of society. Pretending that morality comes to us by divine revelation is a form of exclusivism and I would have thought that in this day and age we’d be smart enough to see beyond that. 

More Orangutans

Friday, May 16th, 2008

Last month I signed up with New Scientist and ended up automatically sponsoring an orangutan in Borneo. We received the pack with photos of “Roy” (who’s very cute and undoubtedly adorning the fridges of many other people) and I never thought all that much else about it.

For my last post I was scavenging around for photos of apes and came across this and thought it worthy of a post of its own: